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| select publications, presentations, and posters |
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Evaluation of label-free quantitative proteomics in a plant matrix: A case study of the night-to-day transition in corn leaf
Leah S. Riter, Pamela K. Jensen, Joan M. Ballam, Ewa Urbanczyk-Wochniak, Timothy Clough, Olga Vitek, Jennifer Sutton, Michael Athanas, Mary F. Lopez and Susan MacIsaac
Anal. Methods, 2012, Advance Article
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Disulfide mapping validation using label-free differential analysis
Michael Athanas1, S Peterman2, D Sarracino2, B Krastins2, A Prakash2, T Rezai2, M F Lopez2
1VAST Scientific, Cambridge, MA; 2Thermo Fisher Scientific BRIMS Center, Cambridge, MA;
Novato, CA
ASMS 2011
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Disulfide mapping validation using label-free differential analysis
Michael Athanas1, S Peterman2, D Sarracino2, B Krastins2, A Prakash2, T Rezai2, M F Lopez2
1VAST Scientific, Cambridge, MA; 2Thermo Fisher Scientific BRIMS Center, Cambridge, MA;
Novato, CA
MSACL 2011 Conference Poster
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Detection of Age-Related PTMs as m/z Pair Tags in LC-MS Measurement of Mesenchymal Stem Cell Lysates using a Two-Pass Sample Acquistion
Michael Athanas1, D Sarracino2, B Krastins2, A Prakash2, T Rezai2, J Sutton2, V Lunyak3, M Dobke3, M F Lopez2
1VAST Scientific, Cambridge, MA; 2Thermo Fisher Scientific BRIMS Center, Cambridge, MA; 3Buck Institute for Age Research,
Novato, CA
MSACL 2011 Conference Poster
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Detection of Age-Related PTMs as m/z Pair Tags in LC-MS Measurement of Mesenchymal Stem Cell Lysates
Michael Athanas1, D Sarracino2, B Krastins2, A Prakash2, T Rezai2, J Sutton2, V Lunyak3, M Dobke3, M F Lopez2
1VAST Scientific, Cambridge, MA; 2Thermo Fisher Scientific BRIMS Center, Cambridge, MA; 3Buck Institute for Age Research,
Novato, CA
HUPO 2010 Conference Poster
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Discovery of Neurovascular Mediators in PFO-Related Stroke Using a Two-Pass
Label-Free Workflow
Michael Athanas1; David Sarracino2; Taha Rezai2; Amol Prakash2; Jennifer Sutton2; Bryan Krastins2; Mingming Ning3; Mary F Lopez2
1VAST Scientific, Cambridge, MA;
3ThermoFisher Scientific, BRIMS, Cambridge, MA;
3Mass General Hospital / Harvard Medical School, Boston, MA
HUPO 2010 Conference Poster
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Mass Spectrometric Discovery and Selective Reaction Monitoring (SRM) of Putative Protein Biomarker Candidates in First Trimester Trisomy 21 Maternal Serum
Mary F Lopez*†, Ramesh Kuppusamy‡, David A Sarracino†, Amol Prakash†, Michael Athanas§, Bryan Krastins†, Taha Rezai†, Jennifer N Sutton†, Scott Peterman† and Kypros Nicolaides‡ ThermoFisher Scientific BRIMS, 790 Memorial Drive, Cambridge, Massachusetts 02139, VAST Scientific, 790 Memorial Drive, Cambridge, Massachusetts 02139, and Fetal Medicine Foundation, 137 Harley Street, London, United Kingdom W1G 6BG
Journal of Proteome Research; May 25, 2010 (Article) DOI: 10.1021/pr100153j
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A two-pass informatics-driven label-free workflow for discovery of neurovascular mediators in pfo-related stroke
Michael Athanas1; David Sarracino2; Taha Rezai2; Amol Prakash2; Jennifer Sutton2; Bryan Krastins2; Mingming Ning3; Mary F Lopez2
1VAST Scientific, Cambridge, MA;
3ThermoFisher Scientific, BRIMS, Cambridge, MA;
3Mass General Hospital / Harvard Medical School, Boston, MA
ASMS 2010 Conference Poster
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Discovery analysis of multiple protein marker panels: Optimizing sensitivity and selectivity
M. Athanas1, A, Prakash2, T. Rezai2, B. Krastins2, D. Sarracino2, Kypros Nicolaides3, Ramesh Kuppusamy3, Mary F. Lopez2
1VAST Scientific, Cambridge, MA, USA, 2Thermo Fisher Scientific, BRIMS, Cambridge, MA, USA, 3Fetal Medicine Foundation, London, UK
1VAST Scientific, Cambridge, MA; 2University of Washington, Seattle, WA; 3ThermoFisher Scientific, Cambridge, MA; 4ThermoFisher Scientific, Somerset, NJ; 5Harvard University, Boston, MA
Mass Spectrometry Application to the Clinical Lab 2010 Conference Poster
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Analysis of multiple protein marker panels: Optimizing sensitivity and selectivity
M. Athanas1, A, Prakash2, T. Rezai2, B. Krastins2, D. Sarracino2, Kypros Nicolaides3, Ramesh Kuppusamy3, Mary F. Lopez2
1VAST Scientific, Cambridge, MA, USA, 2Thermo Fisher Scientific, BRIMS, Cambridge, MA, USA, 3Fetal Medicine Foundation, London, UK
1VAST Scientific, Cambridge, MA; 2University of Washington, Seattle, WA; 3ThermoFisher Scientific, Cambridge, MA; 4ThermoFisher Scientific, Somerset, NJ; 5Harvard University, Boston, MA
International HUPO 2009 Conference Poster
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Label Free Differential Analysis: An Iterative Approach to Increased Coverage, Improved Statistics and Results
Michael Athanas1; Michael J. Maccoss2; Amol Prakash3; Lukas Kall2; Daniela Tomazela2; Brendan Maclean2; Taha Rezai3; Bryan Krastins3; David Sarracino3; Scott Peterman4; Alejandra Garces5; Sarah Fortune5; Mary F Lopez3
1VAST Scientific, Cambridge, MA; 2University of Washington, Seattle, WA; 3ThermoFisher Scientific, Cambridge, MA; 4ThermoFisher Scientific, Somerset, NJ; 5Harvard University, Boston, MA
ASMS 2009 Conference Poster
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Performance characteristics of an FT MS-based workflow for label-free differential MS analysis of human plasma: standards, reproducibility, targeted feature investigation, and application to a model of controlled myocardial infarction
Jennifer Sutton, Dr. , Tori Richmond, Xu Shi, Michael Athanas, Celeste Ptak, Robert Gerszten, Leo Bonilla
PROTEOMICS - Clinical Applications
Volume 2 Issue 6, Pages 862 - 881
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Application of label-free quantitative differential analysis for biomarker discovery in Tuberculosis mycobacterium
Michael Athanas1, Bryan Krastins2 , David Sarracino2 , Amol Prakash2, Taha Rezai2, Mary F Lopez2, Alejandra Garces3, Sarah Fortuane3
1VAST Scientific, Cambridge, MA ,2Thermo Fisher Scientific, Cambridge, MA; 3 Harvard University, Boston, MA
HUPO 2009 Conference Poster
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Quantitative, Top-Down Identification of Differentially Expressed, Endogenous Peptides in Human Serum: A Robust, Sensitive and Novel Discovery Workflow
David A. Sarracino, Bryan Krastins, Michael Athanas, Amol Prakash, Taha Rezai, Kypros Nicolaides and Mary F Lopez .
Poster: Human Proteome Organisation Conference - 2008
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Development of a Novel Label-Free Differential Analysis Workflow for Protein Biomarker Discovery from Renal Cell Carcinoma Tissue Interstitial Fluid
J. N. Sutton, S. E. Abbatiello, B. L. Hood, M. Athanas, R. Dhir, M. Lopez, T. Conrads
Poster: Human Proteome Organisation Conference - 2007
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Weak decays of Lambda Helium 4 Hypernuclei
J. D. Parker, M. J. Athanas, P. D. Barnes, S. Bart, B. Bassalleck, R. Chrien, G. Diebold, G. B. Franklin, K. Johnston, P. Pile, B. Quinn, F. Rozon, R. Sawafta, R. A. Schumacher, R. Stearns, I. Sukaton, R. Sutter, J. J. Szymanski and V. J. Zeps
arXiv:0705.3311 (May 2007)
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